heathb,
looks like you are correct. The 8360 has an ignition module in it and must put out a square wave.. The MSD diagram I have shows the red to 12v switched and the black to ground and orange to the white wire on the 6A.. That orange wire would go to pin 24 on the DB37 and output of the MSII from pin 36 on DB37.
It looks like the settings will be as indicated in the Mega Manual
http://www.megamanual.com/ms2/msd6a.htm
Are you using Q16 the coil driver transistor? There are two different transistors that have been used.. the old one VB921 and the newer one BIP373 (which needs an insulator between it and the heat sink). With either one the output signal will be inverted. It is also recommended to had a pull up resistor on the output (collector) of the driver. Look for IGBT Pull-up Circuit in the assembly manual.
I am not sure if you built your MSII or purchased it.. you can check with the supplier if need be. If Q16 is mounted on the heat sink, then it probably is in use.
Ignition Input Capture is refering to the pulse that is being applied to the processor. With my VR sensor, I have the trigger set on the steep transition on the neg to positive going portion of the waveform. This relates to a falling edge on the input to the processor. So Ignition Input Capture would be set to Falling edge. On my setup, I added a transistor to the output of the VR circuit to increase my pulse voltage to the processor. That inverted the signal and I had to change mine to Rising Edge.
In your case, it seems there would be a square pulse applied to the Optoin and I am guessing an inverted signal to the processor. I read through the Hall setup and I dont see an explaination for how it is suppose to be. I suspect the MSD6A will fire either way, but one would be offset. My guess again would be to try it one way and see if the timing makes sense. Then switch it and see how much it changes. If I had to guess, I would think it would be Falling Edge.
Do a search for others that have used the Hall setup and see what side they trigger on.
What I am told is that if Q16 is used, then the Coil Charge would be Standard Coil Charge, and Spark Output would be set to Going High.
The Going High on Spark output should show a smaller Trigger offset. When you set the trigger offset, it should be 10 or 20 degrees, depending on your intial setting. If you see 45 degrees or a huge number then Going High would be incorrect.
Hopefully others will chime in on this.. I have spent a lot of hours trying to get my head around it. And it changes for each setup. The main idea is to make sure it seems right before you put boost to the motor. Look at the timing and see that it makes sense, and ask questions.
One thing I learne was that with the MSD6 box.. you need a simple timing light. Do a search for timing lights.
I am having timing issues and I have used 5 different lights on my motor to see if that is the problem. They tell me you can compare them and see a difference at higher rpm. The old Sears lights without advance are the recommend ones.. I found them on ebay for cheap.. I now have two the are pretty much brand new and when I get my timing issues settled, I will compare the three lights I have left to see what is what.
I hope this helps. And I hope I didnt make it more confusing than it is.. Please feel free to fire questions. And if anyone else has done this setup. Please chime in..
Dick